rs38389156 SNP Detail

Summary

• ID
  rs38389156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3717176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTAAA GTGGAAAAAC
  GCTGAGCTGT CACTCAGATT CTTGTATGCC TCAGAATTCT ATGTGGGGCT GCTGCCATGT
  TGCACTGATG CAGGTTTCCT GTCAACTTTC CTCAAATGGA TGAAATGTTC CTATGAGAGA
  GAAACTACAT AGTACTCATA TTTCAATTCT CCTTAACTAA TAAAGTGATT CTGATTCAAA
  M
  CTTAAAAAAT AACAAATTAT CACTTGGAGA TATATATGTA TATTTCTTGT TGTGTTTTAT
  TAATTTTTGT CTTTTGAGAC GGGATTTCTC ACATAGCCTT GGCTGATCTA GAAGTTACTT
  TGTAGATTAG GCTGGCTTTG AACTCAGATA TCTACCTGCT TCTGCCTCTG CCACCGGAGT
  TCTGAAATTA AAGGTATTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51223088	NES14299597	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38389156					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51223088	NES14299597	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3717176 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	356 bp downstream
Xkr4	X-linked Kx blood group related 4	within coordinates