rs38389619 SNP Detail

Summary

• ID
  rs38389619
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131456291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCTGGG AACTGGGAAA
  TCGCCCAATT CCGGAGCCGG GGTCGGAGCT GAAGAGTAGA AGATTCTTGA AGACCAGAGA
  AAGTTAAACC TGTTGCGGAA GTTTCCCTTC AACTCCACTT GTCTCTCCCC ACCTTGAACT
  CCATTTCCCT TCCCTCCCCA AGTCAAAAGG AAGTAAAATT TGCTCTTCCT ACTCAATAAA
  W
  ACTAAGTTTC CCTTTCCACC AGGAAAATAG GACTCTCTTC CCAGTTTTAG AGCGTAGAGA
  ACGAGAGGCC TTCCGTCTTG ATTGTTAGCC TGAGGAAATC AAAGTTTCCC CTTTCAAAAT
  TCTGCACCTC TTTCAACGTG GGACGCTATG TCTACCAACA ACTGTACTTT CAAAGACCGA
  TGCGTATCCA TCCTGTGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368028	NES14475981	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38389619					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368028	NES14475981	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131456291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	865 bp downstream
Rr396286	regulatory region 396286	970 bp downstream
Rr396287	regulatory region 396287	660 bp downstream
Rr418129	regulatory region 418129	1919 bp distal
Rr418131	regulatory region 418131	1217 bp distal
Rr418132	regulatory region 418132	640 bp distal
Rr418133	regulatory region 418133	398 bp distal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	1201 bp upstream
Tssr8629	transcription start site region 8629	682 bp downstream
Tssr8630	transcription start site region 8630	642 bp downstream
Tssr8631	transcription start site region 8631	551 bp downstream
Tssr8632	transcription start site region 8632	177 bp downstream
Tssr13599	transcription start site region 13599	1963 bp upstream
Tssr13600	transcription start site region 13600	1808 bp upstream
Tssr13601	transcription start site region 13601	1260 bp upstream
Tssr13602	transcription start site region 13602	1168 bp upstream
Tssr13603	transcription start site region 13603	1013 bp upstream