rs38390548 SNP Detail

Summary

• ID
  rs38390548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:74628986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATGTCT CTTAGCTCCT
  CCCAAACTTT CTTGAGCATC CTTTTGAAAC TGTCTACAAG CTAGCACACC TGAGCTGTGT
  GGTGGCTGTT CTAGTTTCTT TAAGAACACA GGGAGTGAGA GGTAGATGGT CTTAGAAATG
  AGGCAGACTA TAGACACACC AGGCTGCTGT CTTTTGACAT GTAGACTTAG GAGGAAAAGC
  R
  AAGGGATCTT TTCTTAGAGG AAAATGTTTG CCACCTGATG GAGCAGTCCA ACATCTTTGT
  AACAGCTGGT GCACACTTAA TTCCAACACT CAACCTCAAA AGGGTGGTTT CATGGAAAGA
  TAAAGCTGAG TGAGCTTCGA GAGGCATTGA CAGACCGCTT TGTTGAGGAG TGGAATTCTC
  TTTCCAAGAG TTGGAAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50474144	NES13692184	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38390548					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50474144	NES13692184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:74628986 () rs orientation: forward

Symbol	Name	Function Class
1700120E14Rik	RIKEN cDNA 1700120E14 gene	within coordinates
Myo5b	myosin VB	within coordinates