rs38392350 SNP Detail

Summary

• ID
  rs38392350
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74605353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCAGGA TGGGGACAGC
  TGATTTGGAA TAATCATCAA AACACACACA CACACACACA CACACGCACA CGCACACGCA
  CACGCGCACA CGCACACGCA CGCACACGCG CACACGCACA CGCGCACGCG CGCGCACACA
  CACGTACATT CACGCGCACA CCACAACCGC AGATCGGTGT GAGCAGACAT TGTTAAGGCA
  S
  ACGCCCTTGC ACTTCCTCAT CACCAAATGC CCTTCTGCTG AAGTGCTGCC TGTCATGGGG
  GTCAGACAAG CAGGTCCTTG GAACACTGGG TGGGAGCTGC ACAGAGGAGT TCACAGGTAC
  CAGCTTGGCA AAGGTGTCTT CCCTGAGGGG AGGGCTGCGG GTGTAGAGCC TGGCTGGAAG
  GCACTGTACA GTCTTGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	NOD/ShiLtJ	WSB/EiJ
ss51714852	NES14563480	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	NOD/ShiLtJ	WSB/EiJ
rs38392350					SNP	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51714852	NES14563480	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74605353 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	1377 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	788 bp downstream
Tssr134736	transcription start site region 134736	810 bp downstream
Tssr134737	transcription start site region 134737	854 bp downstream
Tssr134738	transcription start site region 134738	1256 bp downstream