rs38394853 SNP Detail

Summary

• ID
  rs38394853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38352317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAGAA TTATTTATTT
  AATTTATGTA TATGTGTACA CTGTACATTG CATCAGGTTC CATTACAGAT GGTTGTGAGC
  CACCATGTGG TTGCTGGGAA TTGAATTCAG GACCTCTGGA AGAGCAGTCA GTGCACTTAA
  ACCACTGAGC CATCTCTCCA GCCCCACATC TTTTCTTGAT AACTCATAAA ACCAGTGCTT
  Y
  CAATTGATAA AATAAGTAGT GATGAAATAA AAACCGACGT ATAGAAAATC ATAATAGAAA
  TGAGAATTGC AGGCAAAGGC AGGGCCAGTA GCATGCTACA TCTAGGACAG TGGTTCTCAA
  CCTTCCTAAT GCTGTGACCC TTTAATACAG TTCCTCATGT TGTGCTGACC GCTAAGCATA
  ACATTATCAT CATTGCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51288147	NES13774306	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38394853					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288147	NES13774306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38352317 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1739 bp proximal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1425 bp upstream
Rr144024	regulatory region 144024	670 bp distal
Rr146156	regulatory region 146156	1283 bp proximal
Tssr55644	transcription start site region 55644	1352 bp upstream