rs38395301 SNP Detail

Summary

• ID
  rs38395301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69539704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATGGTG GATGGTGGCT
  CACATCCATC TGTAATGGGA TCTGATGCCC TCTTCTGATA TGTCTGAAGA CAGTGACCGT
  ATGCTCATAT AATTAAAATA AATAAATAAA TCTTTAGAGG ATTCACTTTT TAAAAAAGAA
  CTATATAGAA CTCTCTGTTT ACATTCAATT ACCTCTTTTA ATACTTCCAG CAATTTTATC
  R
  AGGATTGAAG GATTGTTACA TAGGGACCTG AGATGCACTC AAAGTAGACT TAGGTAACCT
  GGCTACATTT ACTTCATTTG TAACATCAGC TGACTGACTT TTAGTTGAAA TGCTTGGGAG
  CAGGAATGCT TTAGATCTCA AATTTCTTAT TTTGCCTTTT TTTAAAAAGA TTTTTAAAAG
  ATTTATTTAT TTTATGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50565169	NES14071414	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38395301					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565169	NES14071414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69539704 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	1684 bp upstream
Cpgi20406	CpG island 20406	1451 bp proximal
Rr400869	regulatory region 400869	1434 bp upstream
Rr664484	regulatory region 664484	1104 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	1664 bp upstream
Tssr77657	transcription start site region 77657	1681 bp upstream
Tssr77658	transcription start site region 77658	1701 bp upstream