rs38399286 SNP Detail

Summary

• ID
  rs38399286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTACTA CCACTGAGAC
  AAACCACGGT AGTGGCACAC TGCCTCCATC CCTCTCCCTC AGCTAGCCGG TGACCACCCC
  ACCCCCATCT CATGCAGACA TTTTAGACTC TGTACATCAA ACCCTACAAG TACTAGTCCC
  TGCTTAGAAC CATAAATCCT TGCCACGGCA CCGAATACTC CTTTATTTAA GCTTTTGAAT
  Y
  CGTTACTTAT TCAGGGAGAG AGGAAGCAGC ACGTGCATGG TCAAGGCAGC TGTGTGGTCA
  GTCCTGGACA GCTCAGGGGA GGGCAACCTT TAATCATAAA CTATTCTGAG AAAGGAGTTT
  ATATAGCTTT TGTATCTTAA AACCAAGAGT AAAAGAAATC ACTTCAACAA CTTTACATGG
  GTTCCTAGAA TTAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630430	NES14594851	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	T	C	C	C	C	C
ss147445983	ENSMUSSNP719076	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38399286					SNP	T	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630430	NES14594851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469380 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	Intron
Tssr133930	transcription start site region 133930	1313 bp upstream
Tssr133931	transcription start site region 133931	1282 bp upstream
Tssr133932	transcription start site region 133932	1254 bp upstream