rs38399601 SNP Detail

Summary

• ID
  rs38399601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68788447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTTTTA TCTTTGCTAA
  TTGGATACGT TTTAAAGAGT ATAAGGCCCC TTAGTTTGCA TTTCTTTGAT TGTAAATGAT
  GCTTGATACT CTTTATTTCT TTAGATTAAA CAAAACTAGC AGTGTGGTGC ACACCGCTAT
  TTTCCTTTCT CGGTCACCGG TATTATTTAC TCAGTCCGAT GTCTGTATCC ATGTCGCTCT
  R
  TGGTAGAAGG CCTCATGTTC CCAGTTCAGC TTTCCTAAGG CATGCTAGGA GATTTAATCA
  GCAACTGAAA GAGACAGTGG GGCGCGGCGT GCCCTCCATC CAGGTCCCCG TGGACTCTTC
  GCTTTGAATC TGCCTGCTGC TTCTCTGACA GGTGTACTTC TTAGCTCCAG AGACCTGGAC
  CAGACAACCC TGAGCCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732196	NES14251896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38399601					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732196	NES14251896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68788447 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1013 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	804 bp proximal
Tssr85829	transcription start site region 85829	1683 bp upstream