rs38400984 SNP Detail

Summary

• ID
  rs38400984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49315637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTAGAA ACCTGCTGTA
  TTATGCAGAA GGCAAAATCT GTTGAAACTC TGCATTTCAT TATTTGTGGA TAATTCAATA
  CATGTAGAAT ACAATGACAA TCTGGTTGCT ATTCACCACA AGCCATTTTT CAGCTTATAA
  ATGAAATCTT AATTTTACAA AATGTTTCCA TCTACCTTTG ACTCATGTAG CAGGACAAGA
  R
  TATGAAACAC AAGAAAAATT ACTTTTGAAA AGAAATGTTA TAGCTACTTT GGCTTCTATC
  CAACAAAGGT CCATTTCTGA CATGGGTGGT TTTGAGAACT ATTATTGTGC TTTGCAACAG
  TGATGGTCAA CTGAAGCCTT TGACAAATAA ATGCATTATT TCCAACATCA ATAGTCAGCA
  TCTAAGTCTA CATTTTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51106704	NES13870520	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs38400984					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106704	NES13870520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49315637 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50938	transcription start site region 50938	1077 bp downstream