rs38401165 SNP Detail

Summary

• ID
  rs38401165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21014602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TGTTTTTTTG
  TTTTTTAAGA TGTATTTATT TATTATATGT AAGTACACTG TAGCTGTCTT CAGACACACC
  AGAAGAGGGC GTCAGATCTC ATTACTGATG GTTGTAAGCC ACCATGTGGT TGCTGGGACT
  TGAACTCAGG ACCTATGTAC GAACAGTCAG TGCGCTTAAC CGCTAAGCCA TCTCTCCAGC
  Y
  CTGGGCCAAG ATTTTTTAAA CAAGTGATGA GCTTCGTGGC ATGAACTTGT CTTCCAGAGC
  CTAGGGTGCT GAGCACGGTG GGAGGGCACT GAGTTTGAGG CAATGCTGAT AGACTTGGCA
  TTGACATTGA TATGGCATCT CATTAAGCAG CAAAGCATCC TAGTGAGCAC TGGCACACGT
  CCTCGTGACA CTGTCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51993541	NES15007138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38401165					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51993541	NES15007138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21014602 () rs orientation: forward

Symbol	Name	Function Class
1700084C06Rik	RIKEN cDNA 1700084C06 gene	within coordinates
Rr193947	regulatory region 193947	2 bp distal
Rr208293	regulatory region 208293	within coordinates
Tyk2	tyrosine kinase 2	762 bp downstream