rs38401223 SNP Detail

Summary

• ID
  rs38401223
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140702504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGCCGGA ATTTGCCACT
  TCCTTTAAGT CCTGTCTGGC TCCAGAGCCT TGGGTCTCTG ACAGGAGGCT TCTTCATAGC
  TGAGAAAAGG CCACTCTGTA TTCTGCTCCC TAGGAACAGA GGTGAGGACT TTTGCAGCCT
  TCGGACGAGA TGAAGGTGAC ACACAGGTGC GAACCTACAA GCGGAGGGAA CGCCTGCAGA
  W
  TCCTGAAGTT CTGGTAGAAG CTTCGCGTTC CTGTGAAGTG TTAGGAGTAG AGATCCTTAA
  ACTTAGCGCT GTTCAGCATC TCTGTTCCTA AACAAGATGC AAAAATAAAA CTCAAGAGTT
  GTGAAACTGG GGGCTGGTGA GATGGCTCAG TGGGTAAGAG CACCCGACTG CTCTTCCGAA
  GGTCCAGAGT TCAAATCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50482349	NES14107146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38401223					SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482349	NES14107146	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140702504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	362 bp proximal
Gm33560	predicted gene, 33560	640 bp upstream
Gm73068	predicted gene, 73068	889 bp upstream
Gm73077	predicted gene, 73077	within coordinates
Rr400707	regulatory region 400707	439 bp upstream