rs38402562 SNP Detail

Summary

• ID
  rs38402562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86627800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTGCTG AGAGGTGACA
  CTTGCTTGGG CTAAGGATTC TTGGGTGCTC TGAACTGACT GGAATGTGCA GTCTCTCAGT
  GCCGACATGT ATGGACAGAG AAGCGACTGA CTGCACTCAA GACCACAACC CTATGTGCTT
  TCTGCAAAGT GGACAGAGCT GCTATTGGTC AAGGTGGTAC ATGAGGTTTG CGTGCAAGGG
  Y
  GTCTGGACAG GTCCGGTACA CTACCTAACC CGGTGAGGTG GAGAGGACTC TCCTATAGAC
  TGAGGCCCGC CTTGTGCCCG TCCTGGAGCT TGGCTCTTTT GACAGTGGCA CTGGAGTAGC
  CCTCGTCACT GCCCAGGCTC TGCATGCTGC CTCGCTCGTC CGAGTCACTC ACGCTGCTGC
  TCCAGCCCAG GTCCCCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51751318	NES14802919	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38402562					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751318	NES14802919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86627800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mxd1	MAX dimerization protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr61827	transcription start site region 61827			1776 bp upstream
Tssr61828	transcription start site region 61828			1389 bp upstream
Tssr61829	transcription start site region 61829			836 bp upstream
Tssr61830	transcription start site region 61830			645 bp upstream