rs38405675 SNP Detail

Summary

• ID
  rs38405675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82986474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTGCT TCCGGTTTCC
  TGGCCCCTGA AAAGAGCCTG CTCTTCCGCT AGGAGCATCC CACAGTGAAG CTAGTGGGTC
  CTAGTGGGTC TCCTGCAGGG GTCGTGTGGG GGTCAGGGTG GGGCTGCTGC AGGTCTTTGG
  AGGGAGTCCC AAGCCCCAGG GCACAGGGAT AAAGGACAGA GTAAGGCTGG GCTGTGCAAA
  Y
  CTCCTTTCTG CCTTTGTGTT TTCAGCCTTT AAGTGGAATC AGTTCACCCT CCTGGGCCAC
  AGTTTTGGTG AGTCAGCCTA AGGCGGAACC TGAGTTCGGG GGGAGAGCTG TAGGAAAGAG
  AGAACTTGAC ACTGTGGTAC CTGGTGCCTT TCCCTGCCCC TCTGAGGAGA GGGGTGAGAG
  AGTCATCTAA TGCTTACCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51727776	NES14564600	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38405675					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727776	NES14564600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82986474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	1782 bp distal
Gm17206	predicted gene 17206	within coordinates
Rr308146	regulatory region 308146	74 bp distal
Rr312184	regulatory region 312184	1273 bp distal
Rr404540	regulatory region 404540	1953 bp downstream
Serhl	serine hydrolase-like	within coordinates
Tssr132409	transcription start site region 132409	1970 bp downstream
Tssr132410	transcription start site region 132410	1955 bp downstream