rs38410249 SNP Detail

Summary

• ID
  rs38410249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10582731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAGCAA AGGAAAGCAC
  GATTCTACTC TGGGATGTGC ACAGATGGTC ACCTCTTATC CCCAGTCTAG TCCTCCGCAG
  CCCTTCCTGT TTTAAAAGAG GGAAAACCCC GAGGACGCCT GGAGCTATGG AGGAAGGAAG
  GAGGCAGAAT CTGAGGAAGG GGCGCGGATC TGGGCTGGGA AGCCAGCAGG CGGCCACTTA
  R
  GGCGTAGCAG ACCAAAGAGG AGGCCAGTTC TGCCTGCGTA CCGGTACTCT CGCTCTCATC
  CGGGTACTGC GACCTCTGGC GGTTAGGAGA AGGCGGGACC TCAGGGGGCG GGGCCTCGCT
  TGGTTGGCCG CCTCGGGCTC CGTAAGTCCT CCAAGAGGCC AGGTGAGGCC GTCCCGTGAT
  CCTCTGCGCC TGGCCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601262	NES13643017	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38410249					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601262	NES13643017	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10582731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	within coordinates
Ddb1	damage specific DNA binding protein 1	230 bp upstream
Gm59162	predicted gene, 59162	1134 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	within coordinates
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	172 bp upstream
Tssr155069	transcription start site region 155069	189 bp upstream
Tssr155070	transcription start site region 155070	260 bp upstream
Tssr155071	transcription start site region 155071	317 bp upstream
Tssr155072	transcription start site region 155072	552 bp upstream
Tssr155073	transcription start site region 155073	906 bp upstream
Tssr158200	transcription start site region 158200	1052 bp upstream
Tssr158201	transcription start site region 158201	1030 bp upstream
Tssr158202	transcription start site region 158202	1000 bp upstream
Tssr158203	transcription start site region 158203	970 bp upstream
Tssr158204	transcription start site region 158204	within coordinates
Tssr158205	transcription start site region 158205	43 bp downstream
Tssr158206	transcription start site region 158206	100 bp downstream
Tssr158207	transcription start site region 158207	501 bp downstream