rs38412671 SNP Detail

Summary

• ID
  rs38412671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123827722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGAGCT GGAACTCAGG
  TGCCGGTGCA GCGTGTCCAT CCTGAACGAA AAGCTGGTGG TGGACATGGA TGTCATCTTT
  GAGAGTAGAA AGAGACAGAT ACTTGGGAAT GTCAAAAGAG GTCTGAGAAA ACACTGTTTC
  AAAGAAGTGC ACCTTGAATC TGGGCATTCC TTCCACAGAC ATTTTCTCTG GGCTGGGAAG
  R
  TGGTTCAACA TCAATTTCTG GCCTTTTCAC CCACACTCAA AAAAAATGGC TCCCCCCTAC
  TGAGGATTGA ATTTAGCCTC TCATCCAATA GGCAAGAATT ACATCCTCAG CCTGCTTCAT
  TATGACATTA TTTTCGCGCG CGCACGCGTG TGTGGTATGT GTGTGTGTGT GTTTGTGTGT
  GTGTGTGTGA GAGAGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50631663	NES14029335	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38412671					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631663	NES14029335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123827722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	1151 bp proximal
Rpl13	ribosomal protein L13	1367 bp upstream
Rr382749	regulatory region 382749	within coordinates
Rr672353	regulatory region 672353	287 bp distal
Rr672354	regulatory region 672354	458 bp proximal
Rr672355	regulatory region 672355	877 bp proximal
Tssr79911	transcription start site region 79911	1361 bp upstream
Tssr79912	transcription start site region 79912	1376 bp upstream
Tssr79913	transcription start site region 79913	1448 bp upstream
Tssr83335	transcription start site region 83335	1277 bp downstream