rs38413906 SNP Detail

Summary

• ID
  rs38413906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70847599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGGTCA CAGGAGCCAT
  TTTCAACTTC GGTCACACTG TGCGTGAATT ATTACTGGAT ACAGCTTTGG GGATTTGATA
  ATGGTTAATG TCTGAGTCAG TTATTGACAA AACAGTTGTG CATATGCGTC TGGCTTTCAA
  AGCAGACCGA GAAAAAAAAA TTAGAAAAAA AATCTAAGAA GTACAGATAA AGCAAATACA
  R
  ATTACGAACC ATTATCTTAT TCTGTTTAGG TGAATAATAG GATCATCAAC TGACACTACA
  ATGAAAAATT GATTGGGGAA CTTTTTAAGT GGCAAAATTG AGCTGACTCC TTAGAACTCA
  AAGTTTGGTA GCCACATTAT CAAAAGTGGG GCAGACAAAT AATCTGCACC TTATGGCATA
  ACACAGGGCT CTGCACGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51674883	NES14816826	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38413906					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51674883	NES14816826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70847599 () rs orientation: forward

Symbol	Name	Function Class
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	within coordinates
Rr399692	regulatory region 399692	1612 bp upstream