rs38415299 SNP Detail

Summary

• ID
  rs38415299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97596019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCTTCT TCTCCTCCCC
  ATCCTCCTCC TGCAGCCTCT CCCCCTCCTC CACTTACTCC TCCTCCTCCT TTGCTCCCTC
  CTCTTCCTCC TTCACCTTCT CCTTCTTTTT TTTTAGGCAA AGACTTTTAT TAATTCTTTT
  CCAAACTTTA TTCCCAGGCT TCTTCAGCTT AATTTGCCCC ACAGAATAAA TTGTCTATAC
  W
  CAAAAACTGA AAAGAGTAGA CATGTCCAGG GGGTTTGGGC TTAGAATATT AAAGATCTAG
  ATCTTATCAG ATCTGTAAAA GAATTTTAAA AGTAGTTATG ATTTAAAATA GTATCTCCTA
  TAGCTTCTGA AAGTGAATCC TTCAGAAGTT GTCTCAGTTC AGTTTGTCTT GTTCTCAGAA
  GTGTCATCAA AATTCTCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50996654	NES13919795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38415299					SNP	A	A	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996654	NES13919795	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97596019 () rs orientation: forward

Symbol	Name	Function Class
Mir7225	microRNA 7225	1806 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	1125 bp downstream