rs38415731 SNP Detail

Summary

• ID
  rs38415731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTCCCT CCTGTCTGAT
  CTCCTTTCTC CAGCCCTTGG CTTAGGAAAT ACAGAGGGTT GGCAAGCCAA TGAGAATTAG
  CTGTGTCTGT GATGTCATAA GTTACCAGGC AGACAGGTTT TCTGGAGTTT CCTAAATTAC
  CCTTCCTGGT TGCTGGAGTA GGCAGGATGC AAACTTATCA CGAGAATTTC CAATGTAGTT
  Y
  GTCTTACTTA GTCTGAGTCT GCGTTACTAT AATAGAAAGC CACAGACTGG GTCATTTATA
  TAAATAATAA TAAAATCTGG AGATTTAGCC GGACGTGGTG GCACACGCCT TTAATCCCAG
  CACTCGGGAG GCAGAGGCAG GCAGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAAAGTG
  AGTTCCAGGA CAGCCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50416912	NES13460480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38415731					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416912	NES13460480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939888 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1859 bp proximal
Rr405670	regulatory region 405670	1657 bp downstream
Rr405671	regulatory region 405671	859 bp downstream
Rr405672	regulatory region 405672	3 bp downstream
Tssr5344	transcription start site region 5344	855 bp upstream
Tssr151328	transcription start site region 151328	1799 bp downstream
Tssr151329	transcription start site region 151329	1728 bp downstream
Tssr151330	transcription start site region 151330	848 bp downstream
Tssr151331	transcription start site region 151331	829 bp downstream
Tssr151332	transcription start site region 151332	181 bp upstream
Tssr151333	transcription start site region 151333	719 bp upstream
Tssr151334	transcription start site region 151334	1083 bp upstream
Tssr151335	transcription start site region 151335	1092 bp upstream
Tssr151336	transcription start site region 151336	1126 bp upstream
Tssr151337	transcription start site region 151337	1180 bp upstream
Tssr151338	transcription start site region 151338	1236 bp upstream
Tssr151339	transcription start site region 151339	1415 bp upstream
Tssr153493	transcription start site region 153493	1239 bp downstream
Tssr153494	transcription start site region 153494	1261 bp downstream
Tssr153495	transcription start site region 153495	1477 bp downstream