rs38418782 SNP Detail

Summary

• ID
  rs38418782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143569257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGAGA TGAGATCATT
  CCATTTTTTT TCTTTATAAG ATAAAAAAAT TAAATACATA AATTAAACGT CAGTATCCTG
  CGATGTCGTG GCTTCGTAGG GGTCAGTTTT ACTTGTGGTC AAAGGCAGAG GTATGGCTTT
  CAAGGCAGAT GCATTCTTAA CTGAATTCCA GCCAAGGGTG TGATTGGAAG GTTTCGGTTT
  W
  CCCATTTCTT TGATGGTTGG TTCTTTTGTA GGGCTGATGG AAACCTGGCA TAGCCAATTC
  CCTTTCCAAC TCTGCTGCTT TGTTTTGTTT CTTTTTGTTT TGTTTTGTTT TTAAAGCAAT
  TGCTGCAATG ATTGGAAGAG CATGCCTTTT CTCCACAGAC AGGCTGCACT TGCATCTCCT
  TGGGTTAGGG ACATCATGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51659489	NES14643672	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	T	T	T	T	T		T	T	T	T
ss136026691	ENSMUSSNP3127984	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38418782					SNP	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51659489	NES14643672	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143569257 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	within coordinates
Rr79606	regulatory region 79606	within coordinates