rs38421687 SNP Detail

Summary

• ID
  rs38421687
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAAGAATG CCCCCACAGA AGATAACTTA TGTGTCTAAG
  AAGTATATTA TCTACATTTG CTGTTTAATT GTTTTGATAA GGAATAAAGG GGATTCCCAC
  M
  AATAAATAAA TAAATAAATA AATAAATAGA ATTAGTTTTC TTTTGAGTAA AAAAATGAAA
  GCTTTTAAAA TAATTAAATT TGAATAATAA ATTTAAATTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50908864	NES13484790	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38421687					SNP	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908864	NES13484790	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842764 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	342 bp downstream
Mrpl15	mitochondrial ribosomal protein L15	668 bp downstream
Tssr5799	transcription start site region 5799	1419 bp downstream