rs38422268 SNP Detail

Summary

• ID
  rs38422268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66849229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGCTTA CCTCCAGAAA
  ACTAGATCAC ATTTTCTAAC AGGACAGCAG CAGATCTACT AAACTAGACT CCTGATAAGC
  ACATAGTCCC TGTGGACTGC GTACTCAACT TGCCCAAATG CTGTACTGTG ATGATAAATC
  AGCATTTCAG AAGACATGTA AGGTACTAAC TCATGATACT CTAGCTTGGC CAAACTAACA
  R
  AATTAAAAGT CTTGTGACAT TTGAACAGCT CTTTTTGGAG TATGACCATT GTGAGCATTG
  CTTCGCCAAT TACTAAAGAT CATGCAGCTA TCAAGTGGTA AGAATGTTGA GACTCTGAGC
  TATCTTTTGA CAGTATTTGA TGCATATTTT GTTTAATTAG ATATTAAGAT GATATGTAGT
  GTATCCCCAA TATCTACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50972570	NES13935071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38422268					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972570	NES13935071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66849229 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	1779 bp distal
Rr366707	regulatory region 366707	1810 bp downstream
Rr577871	regulatory region 577871	1852 bp distal