rs38422582 SNP Detail

Summary

• ID
  rs38422582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83082033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTTTCC ACCAGGCTTT
  GCTTGAACAT GGACGAAAGT ACACACACCT GGAATTCCTT TTTCCTCTTT TTACAAGATC
  CAGGAAGTGA ATTCTTATTA GTCAAACCCA ACTCAAACAC ATCATAAATG ATACTTGTAT
  CATTTATGGA ATTTGGGAAC TATGCATATT TATAAGCATG AATGCTGCAG CCCAGTGATG
  Y
  CTATTGGCTT GCCCCTAGTG AGTTATCAAG TAATCGAGCT TTAAAGCTGT TTAGCCCATA
  ATCCACACCA TTCAAAACAC ACAGAAAGTG GTTACAGTCT GTCAATGGAC TCTCTGGCCT
  GGTGAATACC AGGAGAAAAG GTGACTCCCT GGGTATTCAG CATAGAGACT AAGAAGCTGT
  CAGTTAAGAA GGCAATGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971185	NES14983406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C		T		C	C	T		C
ss145303337	ENSMUSSNP4489813	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C					T
ss322735761	CHEV_8_84879303	CHEVERUD	SCREENING_POP	f	SNP											C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38422582					SNP	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971185	NES14983406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83082033 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1982 bp upstream
Tssr81944	transcription start site region 81944	1924 bp upstream
Tssr81945	transcription start site region 81945	1873 bp upstream
Tssr81946	transcription start site region 81946	1820 bp upstream
Tssr81947	transcription start site region 81947	1057 bp upstream
Tssr81948	transcription start site region 81948	761 bp downstream
Tssr81949	transcription start site region 81949	1610 bp downstream
Tssr81950	transcription start site region 81950	1991 bp downstream