rs38422809 SNP Detail

Summary

• ID
  rs38422809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91736583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAAACTTG GTGCTTGTAA GCCAAGCATA TCACCTGGAC
  TCAGCCACCG CCACCCACAG CCTGGTGCTG TGAAACAAAG CAGGAGCCAC ATTGTTGTCC
  R
  GGAGCTACAC TGTTATACAT TCTTACTAAG TCTTCACATC TCACATGGTT AAGTTTCTGT
  TTCCTAAGCC TAATGTATCC TGAAGACCAT GTTTTTCAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366821	NES13739613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38422809					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366821	NES13739613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91736583 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1907 bp downstream
Rr141761	regulatory region 141761	1183 bp distal
Rr379752	regulatory region 379752	417 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	539 bp downstream
Tssr57753	transcription start site region 57753	1773 bp downstream
Tssr57754	transcription start site region 57754	1677 bp downstream
Tssr57755	transcription start site region 57755	1581 bp downstream
Tssr57756	transcription start site region 57756	1541 bp downstream
Tssr57757	transcription start site region 57757	1516 bp downstream
Tssr57758	transcription start site region 57758	1480 bp downstream
Tssr57759	transcription start site region 57759	1256 bp downstream
Tssr57760	transcription start site region 57760	1200 bp downstream
Tssr57761	transcription start site region 57761	1183 bp downstream
Tssr57762	transcription start site region 57762	1142 bp downstream
Tssr57763	transcription start site region 57763	1118 bp downstream
Tssr57764	transcription start site region 57764	1094 bp downstream
Tssr57765	transcription start site region 57765	1061 bp downstream
Tssr57766	transcription start site region 57766	1035 bp downstream
Tssr57767	transcription start site region 57767	964 bp downstream
Tssr57768	transcription start site region 57768	954 bp downstream
Tssr57769	transcription start site region 57769	754 bp downstream
Tssr57770	transcription start site region 57770	643 bp downstream
Tssr62095	transcription start site region 62095	1250 bp upstream
Tssr62096	transcription start site region 62096	968 bp upstream
Tssr62097	transcription start site region 62097	761 bp upstream