rs38429393 SNP Detail

Summary

• ID
  rs38429393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5713239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCTGCC CCCCACCCCT
  CATCTTCACA CAAGGTCCAT TGAGGCCAGG ACATTCCTTG CAGCCTGTGT CACTGAGGGG
  GGAAAAGGGG GGTGCCCCGC CCCCACAGAT CCGGAAGGCC TGGCTGCCCC AGGAGGAGGC
  GCTGGATGCT TCCCAGCACA TCTGGAGGTC GTGACCCTAT TTCTGTTGCC AGGGAGTGCT
  R
  CAGATGTTTC CTCCCAGGCC AGACTCAGGA TTGCAAAGGC TGGGAAAGAG GTCACACTGG
  GAAAAGGGGA GCCCCAGAAT AGGGGGAGCC CCACACACTC AGCAGCAGGA GCAGCTGCCA
  GCATTGCTGA GAAAAGTCCA GAACCAATGA ATCCACTCAG TGGAGCTCTG AATCTGCTCA
  TGCAGAGGAG GGAGTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50578088	NES13650468	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38429393					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578088	NES13650468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5713239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10467	CpG island 10467	192 bp proximal
Pcnx3	pecanex homolog 3	1424 bp downstream
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157622	transcription start site region 157622	1549 bp upstream
Tssr157623	transcription start site region 157623	424 bp downstream
Tssr157624	transcription start site region 157624	463 bp downstream
Tssr157625	transcription start site region 157625	490 bp downstream