rs38429931 SNP Detail

Summary

• ID
  rs38429931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45342871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAGC CGGGACTGAG
  GGGTTGGCAA AAAGCAGGCA TTTTCGATGG TTAGCAATCT GGGCACCAAA TCGACACTTG
  GGCAGCGCGG GCAGTTGAGC TTCTAGGCTG TGGTAGAGGA CGTGCCCCCG GGCGCGCAGA
  TGGCAGGAGG GAGAGGAGGC GGCCGAACTC CGCGCCCTTG CGCTGTAGAG CACAGACGCT
  Y
  CTCGGCTTTA CCTGCTCAAG CCTCTAACTT TTCTCCTTCG CGCCCAGAGG GCAGCTTCTC
  CTTTCGCCCC CTTTGCATGG GTTGGCCTGG TCCAATAATA ATTCTTGCCC CTCTAGGCAA
  TGGAGAAGGA CAGCCAAGAG CCCGGGGGAG GGGTCTAGTC CTCTGCTAAT GCCTGGAGAT
  GTACGGAGTT TGTAACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52013246	NES15029948	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	C		C	T	T	C		T
ss322943361	CHEV_9_45239656	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38429931					SNP	C	T	T	T	T	T	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013246	NES15029948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45342871 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4833428L15Rik	RIKEN cDNA 4833428L15 gene			341 bp upstream
Cpgi21692	CpG island 21692			within coordinates
Dscaml1	DS cell adhesion molecule like 1			Intron
				Noncoding-Transcript-Variant
Rr383299	regulatory region 383299			within coordinates
Rr677921	regulatory region 677921			1270 bp distal
Rr677922	regulatory region 677922			within coordinates
Rr677923	regulatory region 677923			497 bp proximal
Tssr84800	transcription start site region 84800			1194 bp downstream
Tssr84801	transcription start site region 84801			234 bp downstream
Tssr84802	transcription start site region 84802			207 bp downstream