rs38430215 SNP Detail

Summary

• ID
  rs38430215
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34524464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCTCAC GAAAATTTCT
  ACCTAACTGG ACTTAGTTTG TAAAATGGAT TAGAAATACG TGAGAACCAA TTAGCAGAGT
  GCTCTCAGTC TGGGAGGAGG GTTTATACCG GGTTGCTAAG GGGCTTCCTC CTTGTCTAAC
  AGTCGAATGA AGACATTCTC AGCCTCCTAA ACTTATTAGT AAACGCTGCA ACAGGCTATG
  W
  GTGCTCTGAT CAACCCAGAC CTCAACCCAT TTGAAACATC TGCAGGGTCT GCGGGAAAGC
  TCCTGACCCA CAGCTAGCTC CAAAGGAGAA AGCATACTTG ATCTGCCTCG AAGGTTCTGA
  CCTGATGGCG ACCCGCCAAG TGACATGCCT GGGAAGATTT CACAACTGCT GTCTCCAGGT
  TGGGTGGCAG AAACGAACGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237330	NES14284670	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38430215					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237330	NES14284670	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34524464 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	189 bp proximal
Gm32566	predicted gene, 32566	within coordinates
Rr409037	regulatory region 409037	934 bp distal
Rr409038	regulatory region 409038	484 bp distal
Rr409039	regulatory region 409039	within coordinates
Rr409040	regulatory region 409040	540 bp proximal
Rr409041	regulatory region 409041	819 bp proximal
Tssr36	transcription start site region 36	54 bp downstream
Tssr11221	transcription start site region 11221	541 bp downstream
Tssr11222	transcription start site region 11222	565 bp downstream