rs38430489 SNP Detail

Summary

• ID
  rs38430489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37182491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTCCT TTCACTGCTT
  CTTGTCTGCA GTTCTGGGTT CAGATTCATC AGGGAGACAC CGGCAACATT CTCAACACTC
  CACACAGGCA CGTTGGATTT GCCACACTCG CCTAAAACAC ATCCATGACA GCTTAGCAGG
  TGAACACCCA GCCTTTCTCC CATCAGGTAA CAGAACCCAG CTGAATCCAG ATTGCAACCA
  Y
  TCCTGATAAC TCTGTTTGGG AAAAGCCACT TATTTTCCAA GGCACATAGG TCAAGATATC
  TGCTGGGTTT GAGACAATAA GCAGCTTGCA GTTTGGACTG TACTTTACAA TGTTAGGAAA
  AATGAACTTG AAGATGTTCA CATTTTTCTG TACCAACTGA GTCATCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51641608	NES14589829	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	C	T	T	T	T
ss147625520	ENSMUSSNP4443075	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38430489					SNP	C	C	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51641608	NES14589829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37182491 () rs orientation: forward

Symbol	Name	Function Class
Gm8664	predicted gene 8664	within coordinates