rs38431716 SNP Detail

Summary

• ID
  rs38431716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:24526194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAAGCAA TCCAGGACCA TTTCAAATGA GACATCCCAG
  CTGGCTATGC TAACCCTTAC CTAGCTGCCT GACACAAGTG AAGATGTCAA CTAAGAGCAT
  R
  TGTGTAATAC ATACATACAC ACACATGACT ATAAAAGGTC AGTACTTGAT ATGGAAATAT
  AAACGTTAAC TGTTGTCTGT ACCCCATGAG AGCCAACCTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254307	NES13801028	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38431716					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254307	NES13801028	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24526194 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asb15	ankyrin repeat and SOCS box-containing 15			1949 bp upstream
Cpgi17202	CpG island 17202			719 bp proximal
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5			Intron
				Noncoding-Transcript-Variant
Rr399585	regulatory region 399585			1311 bp upstream
Rr627233	regulatory region 627233			552 bp proximal
Rr627234	regulatory region 627234			1365 bp proximal
Rr627235	regulatory region 627235			1960 bp proximal
Tssr55166	transcription start site region 55166			1991 bp upstream
Tssr59987	transcription start site region 59987			1351 bp downstream
Tssr59988	transcription start site region 59988			1830 bp downstream