rs38431769 SNP Detail

Summary

• ID
  rs38431769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116694252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAGAAG AGTAGAGACG
  GAGACAGAGA TAGAACAAAT GTGTTTCTAA ATCTCCACTG GTAGCCACTT AGCAAATGAG
  TTCCAAGCTC TTTCCTTCTG TGTATAGGTG GGTTGAAAAG ATTTCCGAAT CTGGTAGATT
  TGAACTCTGA CCTTCTTGGT TCAGATGGCA GCACGTGGAG ACCCTCCTCT GTTCCTTACA
  R
  GCATCCGGGA TATGAGATGT GAGAAATCAC GGTGTATGCT GTGTGAACAA TTAACTGGGT
  GACCTTGGGG GAAACCCAGA GGTGTCTGGG AGCCTCAGTA ACTGTGACAG AAAGTACAGA
  AGAAATGTAA CTATACCGGT GTTCTCAAAA CAGAAAAGTG CCCAAGAACC CCGTGACACG
  CTCAGCCTCT GAGGCCGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859012	NES14881836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38431769					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859012	NES14881836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116694252 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	584 bp proximal
Rr145611	regulatory region 145611	251 bp distal
Rr147146	regulatory region 147146	1350 bp proximal
Tmem72	transmembrane protein 72	309 bp upstream
Tssr62610	transcription start site region 62610	629 bp upstream
Tssr62611	transcription start site region 62611	557 bp upstream
Tssr62612	transcription start site region 62612	521 bp upstream
Tssr62613	transcription start site region 62613	368 bp upstream