rs38431929 SNP Detail

Summary

• ID
  rs38431929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113617560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATATCA AGCCCGTGGA
  CCCGTGTTTT ATCCCTGGAA CCCTTGTAAA GCTAGAAGGG GAGAGCCCAC TCCACACAGT
  TGCCCCGTGA CCCTACCCAG GCGCACTTAC TACAATGAGT ATCTATTACA CAGCTATACT
  TGATACATAA AGTGGACATG TCTTGTGTTG TCCTGCCAGT TTGGATATAT ATTATGCATG
  Y
  GAGGAATCGG ATGTTCCTCA GCGGCAAAGC ACTCAATTAG CGTGTGTTCC TGGGTTCCAC
  CCCCAGCCCT GTGAATGAAA AGAAAACAAG AAAGGAAAAA TAAGTATTTT AAGGTTATGG
  TTCTCATTCT GGGATTTTTT TTTTTTCTGT CAGTGGCAGT TGCCAATGTC CAGAGACATC
  TCTAGTTGTC ACACCTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51840193	NES14765776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38431929					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840193	NES14765776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113617560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	1829 bp distal
Gm43964	predicted gene, 43964	within coordinates
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr636559	regulatory region 636559	1066 bp distal
Tssr62463	transcription start site region 62463	1222 bp upstream