rs38435163 SNP Detail

Summary

• ID
  rs38435163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84327038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAGCTG GACAGCAGAC
  CAGGCTCAAG ACTTTTGTCA CTATTGGGGA CTATAATGGT CATGTGGGCC TTGGTGTTAA
  GTGCTCCAAG CAGGTCGTCA CTGCTATTCG AGGGGCCATC GTCTGGGCCA AGCTTTCCAT
  CGTTCCTGTA CAGACAGGCT ACTGGGGGAA CAAGATTGGC AAGCCCCACA CTGTTCCCTG
  Y
  AAGGTGATAG GCCGCTGCGG TTCAGTGCTG GTGTGCCTTA TCCCTGCCCC CCAGAGGCAC
  TGGCATTATC TCTGCTCCTG TGCCCAAGAA GCTACTGATA ATGGCTGGCA TTGATGACGG
  CTGCACATCA GCCAGGGGCT ATACTGCCAC CATCGGCAAC TTTGTCAAGG TCACCTTTGA
  TGCCACCTCC AAGACCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss51971884	NES14986448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs38435163					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971884	NES14986448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84327038 () rs orientation: forward

Symbol	Name	Function Class
Gm18001	predicted gene, 18001	within coordinates
Gm42029	predicted gene, 42029	within coordinates
Rr178048	regulatory region 178048	1838 bp distal
Rr178049	regulatory region 178049	1563 bp proximal
Rr181860	regulatory region 181860	1638 bp distal
Rr185419	regulatory region 185419	1898 bp distal