rs38436603 SNP Detail

Summary

• ID
  rs38436603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47775330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACTAT GTCACCTGCT
  TATTTATCTG ACAAAGAATG ATGTGTGTAA CATAGAGGCC ACTCGGTTGT ATTCCCGATG
  GCGTAACAGC AATGTCAACG ACTCTAACTG AACACGATGG TGATGCTACT GCTCCAGCGA
  AGCTATTTGC TGACTGACTG AATCTGCTAA GGCAGCCAAG AGGATCTCGT CTAAGGCGAC
  Y
  TCGGTCTTGA CGGCCGGAGG CTGGCGTACC TTTACGGGCA TTACATAGCT GCAGATGTAG
  GGCACCTGGC TGCAGAAGCC AAAGATTTTG CTGCCTGTGA AGCCCAGCAC TGCAGAGGAC
  AGAGTGTGCT CCACCTCGTA CAGGTACTTG TGGGTTAAAT CGTCTTTCAG CCTTCCTCGT
  TCATCAGAAA AGTTTTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50857480	NES13520345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38436603					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857480	NES13520345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47775330 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	within coordinates
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	1650 bp proximal
Rr358623	regulatory region 358623	1871 bp proximal
Tssr159755	transcription start site region 159755	216 bp downstream