rs38436644 SNP Detail

Summary

• ID
  rs38436644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164946419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCAAAAC TACTCTTTGG CCACTTTAAT GATGTCCTTG
  GAATTTGAAG AGCATTTGTT CCTTAATTAG AATTTAATCA GGAATAAATC CACTTTTCTA
  Y
  AGATACACTG AGTTTGATAT ACAGAAGGGA GAAGCAAAAC TTTAGGAGAC AGGAGGCAGT
  GGGGGCACGA GTCGGCCAAT TAACCACCTA GGAAACCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51403042	NES14459580	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C
ss145994748	ENSMUSSNP3247410	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38436644					SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51403042	NES14459580	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164946419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi947	CpG island 947	1642 bp proximal
Gm70481	predicted gene, 70481	215 bp upstream
Rr396491	regulatory region 396491	1409 bp upstream
Rr422319	regulatory region 422319	209 bp proximal
Rr422320	regulatory region 422320	422 bp proximal
Rr422321	regulatory region 422321	1685 bp proximal