rs38436919 SNP Detail

Summary

• ID
  rs38436919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40640275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG AGTGTGCAAG GACTTAGGCT
  R
  AGCCCAGCAC TGTGTGTGTG TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52005489	NES15020117	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss136336723	ENSMUSSNP2590141	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322918961	CHEV_9_40537062	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38436919					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005489	NES15020117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40640275 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	1737 bp proximal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	1968 bp upstream
Rr1916	regulatory region 1916	798 bp upstream
Rr676903	regulatory region 676903	1478 bp proximal
Rr676904	regulatory region 676904	1979 bp proximal
Tssr84462	transcription start site region 84462	1975 bp upstream