rs38436945 SNP Detail

Summary

• ID
  rs38436945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47449017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAACACT CAGGGAAGGA
  AATGACCGTG AAAGCAAAAC ACCTCCCAAA TCCAAACAGA CATGATGTCT CCTTTGCTTC
  AGATAAACAA GCGTCTCCCC GCCACCATAT GGCTCCAAAC ACACCTATAC ACACCTGTGC
  GCGCAAAGAA GTCTGCTTTC CAACTTACAC CGGCAAGCCC TCCGACGGAG GTGGCTATGG
  Y
  TTGCATCTGG CATCTGCAGA GCCATCTTAA AGAAACAGGG TCTGAGGCCA ACGCCCGTTT
  ACCTAAGGTC TCCCAAGCAG GGAGGCTGAC CCAAGCAGCG GGTGCTCATC CTTCCCAGCC
  CCACCCGGGG CAGGGGCTGG CAGAGAGGAA GGAAGTGGAG TGCGGCCTGC ACTACGAACA
  GCATGGAAGA CGGAGGCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50859956	NES13511555	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38436945					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859956	NES13511555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47449017 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	855 bp downstream
Rr549060	regulatory region 549060	1342 bp distal
Rr549061	regulatory region 549061	within coordinates
Rr549062	regulatory region 549062	255 bp proximal
Rr549063	regulatory region 549063	863 bp proximal
Rr549064	regulatory region 549064	1452 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	30 bp downstream
Tssr159730	transcription start site region 159730	180 bp downstream