rs38438498 SNP Detail

Summary

• ID
  rs38438498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27838136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGTGC TCCATGCTGA
  AGATTCAACT TGACCAAATC AAGCTGTGTT CCCACCCCAG CAGAACCTAT ATCTTGGGTG
  GGGAGGGAGA GACAGAGAGT TAGCAGATCT ACTAGAAAAC ACCTTCAAAG AGCAAGATCC
  TATGAGAGTA TCTGGAAGCT CAGTGAAGAT GTAGGAAGCC AATGACAGTG GACCCTGGAG
  Y
  GAGTCACATC CAGGCCATGG AGTCAGCTGA GTCATCACAA TGTTGGCCCT GGAGTACCCA
  GCTACAGTTC TACAGTTCAA TCCCTGTAGC CAATGAAATC AGTATTGCTT TCTCGAATTT
  ACTCCTGGCA AGACTGAGAT ACAGATACAG ATACAGATAC AGATACAGAT ACAGATACAG
  ATACAGATAC AGATACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887430	NES14907480	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38438498					SNP	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887430	NES14907480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27838136 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	791 bp distal
Rr644171	regulatory region 644171	878 bp distal
Tssr2159	transcription start site region 2159	1431 bp upstream
Tssr65386	transcription start site region 65386	1600 bp downstream
Tssr65387	transcription start site region 65387	1267 bp downstream
Tssr65388	transcription start site region 65388	1169 bp downstream
Tssr65389	transcription start site region 65389	1115 bp downstream
Tssr65390	transcription start site region 65390	1011 bp upstream
Tssr65391	transcription start site region 65391	1042 bp upstream
Tssr65392	transcription start site region 65392	1064 bp upstream
Tssr65393	transcription start site region 65393	1202 bp upstream
Tssr65394	transcription start site region 65394	1251 bp upstream
Tssr65395	transcription start site region 65395	1366 bp upstream
Tssr65396	transcription start site region 65396	1453 bp upstream
Tssr65397	transcription start site region 65397	1458 bp upstream
Tssr65398	transcription start site region 65398	1472 bp upstream
Tssr65399	transcription start site region 65399	1484 bp upstream
Tssr71448	transcription start site region 71448	1604 bp upstream
Tssr71449	transcription start site region 71449	1591 bp upstream
Tssr71450	transcription start site region 71450	1579 bp upstream
Tssr71451	transcription start site region 71451	1172 bp upstream
Tssr71452	transcription start site region 71452	1055 bp downstream
Tssr71453	transcription start site region 71453	1078 bp downstream
Tssr71454	transcription start site region 71454	1105 bp downstream
Tssr71455	transcription start site region 71455	1416 bp downstream
Tssr71456	transcription start site region 71456	1470 bp downstream