rs38441035 SNP Detail

Summary

• ID
  rs38441035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101076680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGAACT TCAAATGTAA
  AAGAATTATT TCAAGAATAG CTTTTTAATT ATTATCAGAA GGGGAAGCAA TTATTCCATA
  TTCCCCTAAT CTCTTCACTC AAAATATGAC AGAAATAGTC ATTTTTATAT GATAATTTAC
  AAAAATATTA TTAGTTTTAA ATGCAGGGTA TTTTAGCCTT TGAAATGATT ATATAGTTTG
  R
  AAATTTACCT TCAAAAGTGT TTTTAAGAAA GTGAACAACT TAACATCTGA GCAAAGAAAT
  ATCAGATACA TATGGATGAA TGGAATTTTT ACCAAACAAG GGCACAAAAG ATGATCAAAC
  AGAACACTCT GAGCTTATGA GACTTTTTCC TTTGAGGGAC GTTAAAGAAA TAAACATATT
  CCATAATTTT ACCATATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50785727	NES14211497	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38441035					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785727	NES14211497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101076680 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	267 bp distal
Rr685596	regulatory region 685596	1164 bp proximal
Tssr91107	transcription start site region 91107	527 bp upstream
Tssr91108	transcription start site region 91108	484 bp upstream
Tssr91109	transcription start site region 91109	401 bp upstream
Tssr91110	transcription start site region 91110	393 bp upstream