rs38441248 SNP Detail

Summary

• ID
  rs38441248
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131538548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAAGCA CCTAAAAAAG
  TGTTCAACAT CCTTAGTCAT CAGGGGAATG AAAATCAAAA CAACCCTTGA TTTAGGCCAT
  CTCTCATGTA GACTCTCTTC CCAGGTGGTT CTATAGTGTG AAACATCAAC AAAACCAACC
  AGCCCCTGAG GAACACATCT CTTTACAGGA TATAGTCTAT CCTCTGATAT ATCTCTGTAA
  W
  GGTGAGTGAT CCCAGGACAT AGTGTGGTAT GGCCCAGAGC AGGGATCCAG GAAGGGCAGC
  TCAGGGCTGA GACCTGAGAA CATCTTTAAA GGGAAAGTAG TTTTGGTTCT TGAAAGACAT
  CCAGGGAAGA AGGCACAAAG CTTGGAGAAT GGTAGAAAGG TTCGAATACT GAAATAAGTG
  AATTTGTGAG AGAAGAACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51932233	NES14949629	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs38441248					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51932233	NES14949629	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131538548 () rs orientation: forward

Symbol	Name	Function Class
1700016L15Rik	RIKEN cDNA 1700016L15 gene	1055 bp upstream
Gm34725	predicted gene, 34725	within coordinates