rs38442143 SNP Detail

Summary

• ID
  rs38442143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32629370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATAAA TAAGAAAATT
  GGGAAGAGAA GTTCCTTTCA AACTTCATGG AAAATATTCC ATTCTGAATT GGGAGTAAGT
  CGCTGCATCT CCTTAGCTCC TTCCACTTGG CCTCCTGCCT CTGTCCTGGC CCTGTCCTCC
  TTGCTGTCTC CTCTGCCTCC TCTCCTGCTG TCTCTTCCCA GACAGGCCCC AGTTCAGCTC
  K
  CTCAGGCCAT CTTCCTCAGC TAGCTGTGAG CCACTGAACG CTCCCTGGAA GAGGCCTGGC
  TCTGTGTTTG TTTCCTGCGT GGGAGGGAGA GGCAGGCCTT GAGAAAACAG TTCAAAAGTG
  CAGAAAAACT ACCTCTTCCA GCCTAAATAA ACCGGCTTTG CTCCATTTGT TTGCCCAGAT
  TTTTCCTTTG CCCATGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50669217	NES14013672	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38442143					SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50669217	NES14013672	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32629370 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	626 bp downstream
Rr676236	regulatory region 676236	1542 bp distal
Rr676237	regulatory region 676237	within coordinates
Rr676238	regulatory region 676238	1562 bp proximal
Tssr84287	transcription start site region 84287	1313 bp downstream
Tssr88694	transcription start site region 88694	34 bp downstream