rs38442973 SNP Detail

Summary

• ID
  rs38442973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72716123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACTGAG GATTTGAACT
  CAGGTCCTCA TACTTGCATG GCAAGCACTT TCCCAAAAAA GTCATCTCCC AGCTCCATTA
  GTAAGGGAAA AGTTGGAATT CCTTTGGAGA TGAACTGGCA AGGTGGAGAC CATGTTAGAC
  CTGACTCTGT GCTGCCTTCC TAAGTGTGGC AGAGACAGTG CCATGCCGCC TTCCTTCTGG
  R
  CACATGAAAG GCCTGCACTG GTCCAGTTCC CTTGGGGTTG AAAGTGGGGT CATTGCACCC
  ACCCTCCCTT TGCTCTCCTC CCTCATCGCT TAGCTGGAAG CAGCCCTTCA GGGGGAACTA
  ACAGGCCCTA GGGCAGGGTT TCTCAATGGG TGTTCTCTGG GCCAGCTGCC GCAGCCACAC
  GGAACCTCCT AGCCCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51693390	NES14824422	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38442973					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693390	NES14824422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72716123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	1571 bp proximal
Gm67726	predicted gene, 67726	490 bp downstream
Rr136561	regulatory region 136561	478 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates