rs38443612 SNP Detail

Summary

• ID
  rs38443612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12730452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA GAGACTGAAA AGCAGATCCC
  R
  GAGAAAAGCT TTCTTGTTCC TAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51468905	NES13984177	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G		G	G	A	G		G
ss322107101	CHEV_7_13581874	CHEVERUD	SCREENING_POP	f	SNP							A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38443612					SNP	G	A	A	A	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51468905	NES13984177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12730452 () rs orientation: forward

Symbol	Name	Function Class
Rr642427	regulatory region 642427	1615 bp proximal
Slc27a5	solute carrier family 27 (fatty acid transporter), member 5	within coordinates
Tssr70630	transcription start site region 70630	891 bp downstream
Tssr70631	transcription start site region 70631	1142 bp downstream
Tssr70632	transcription start site region 70632	1585 bp downstream
Tssr70633	transcription start site region 70633	1615 bp downstream
Tssr70634	transcription start site region 70634	1647 bp downstream