rs38444473 SNP Detail

Summary

• ID
  rs38444473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110976473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTCCC CATTTAGACA
  CTCTTAGCCT CGACAGAAAC CTGGAGACCA TGTGACCATG GAGGCCACAT GCAGTTAGGG
  CAGAATTGCA TGCTGCTGGC TGAGATGAAC AGCTGGATAC TAAGGAATAT CAACATAAGC
  TGAGCTATGG TGACCTTTTG TAAGCAGGCA CAGTTGAACT CTTGAAGATG GTGTGTGTCT
  M
  TTTGGCTCAG AGAACTGTCT CCACTCCACC TCTCATCTAC TAGCCTAGGC CCGGTGCCTA
  CTGTATCACT TATCTGATGA ATAACTGAGC ACACAAGTTC TGACAGGTAC TACACAGACC
  TTGCCAGCCA ATAGTATCTG AGCCATCACT GAACTGAAAT CACACAAATG GTTAAAGTCT
  ATCTATTCTT TTTTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51791135	NES14722627	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38444473					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51791135	NES14722627	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110976473 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	472 bp downstream
Rr616963	regulatory region 616963	1090 bp distal
Rr616964	regulatory region 616964	419 bp distal