rs38446641 SNP Detail

Summary

• ID
  rs38446641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90885863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTCAC ACAATCACCA
  TCAGAAGAAC TCACAGTCCA CCCCAGACCA ATGCCTGTGC CCACCCTCGT TACACTCACC
  CCCATGAACC CTCACCATGT TTAACACCCA CAAACCCATC TAGAACGTGT GCAGAAAAAC
  TGAACAGGTG TGACCCGTCG GGCCATGGGT CCAAATATAA CCTCATGAAG TGTTCGGATT
  R
  TCAAGACGTT TAATATTTGG AGAGAAGGAC ATGAGACAAC ACGGTGTTCA TCTCGGGACA
  GGGGTTTTAG AGTCCTCAGA TCACTAGGTA GAAACCTGGC TCTGTCCATC CACCGCTGGA
  AGGGGGACAC TTCCATCCCA GCCACCCTTT CAGACTCTGT CTCTCCTGCG TCACCTCACT
  GAGACTTAGC ACCTTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51301120	NES14511549	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs38446641					SNP	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301120	NES14511549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90885863 () rs orientation: forward

Symbol	Name	Function Class
Rab17	RAB17, member RAS oncogene family	within coordinates
Rr415504	regulatory region 415504	992 bp distal
Rr415505	regulatory region 415505	1238 bp distal
Rr415506	regulatory region 415506	1091 bp distal