rs38446926 SNP Detail

Summary

• ID
  rs38446926
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88863161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCACTAG CCAGGTGGAT
  GTCTTGGAAA GAGAAGTATT ACTAAGGATA GGAGAGTCCA GCGCTGGATT TGGATCCTGA
  CCAGTATTGG GCCCCGAACA GAAAACTACT CAAAGGTCTA CATCTTTTTA AGCCGTCATT
  CTTTGTTTCC CATTATTACT TGACGAAAAT CTCCTTCGTC AGGCCGCATA AACCTTTATG
  K
  TCTTGATTTT GGCAAAGCTG GCCCTTGAAC TGCTGGGAAT TCCAGCATGG GTTCCCATGG
  CAGCCCCAAG GATTGGCAGG AATGGTCCCA CTGCAGCCTT TATTCCTGCT CAGTAGGCAG
  AGAAAAGGGA CATGAATGTG CTTCATTTGC CTGGAGACAT TGGCACCCTG GCAATTACAG
  CAACAATTTC TTTGTGCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740328	NES14559989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38446926					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740328	NES14559989	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88863161 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	1063 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	within coordinates
Rr507763	regulatory region 507763	within coordinates
Rr507764	regulatory region 507764	39 bp proximal
Tssr135826	transcription start site region 135826	1099 bp upstream
Tssr135827	transcription start site region 135827	1009 bp upstream
Tssr135828	transcription start site region 135828	394 bp upstream
Tssr135829	transcription start site region 135829	361 bp upstream
Tssr135830	transcription start site region 135830	149 bp upstream
Tssr135831	transcription start site region 135831	within coordinates
Tssr135832	transcription start site region 135832	1466 bp downstream