rs38447916 SNP Detail

Summary

• ID
  rs38447916
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135708733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTATTA TCTTTTTGGC
  TTATATATAT ACAACGACTT CCTGCCCTCT GCTTGGCACA TGGCCCCTCA GCAGATGCCA
  ACCATGCAGC AAGAATTCAG AGAAAGCCTC TTCTCTCTTA GGAGCAGGAG GTTCAATGGC
  CTTCCTTAGA TAAACACCTT CGCTTCCTTG CCTGAACAAA AAGAGCAGTA TCAGGAAAGC
  M
  TCGCTCAAAG TGAATCGCTC AGAGCCCTTC TGCGCTAGGA AGAAGCACAC AGGCAGCGCT
  TCTGGTCTCC TCTCCAGCCT CCCACACTGA GGCCCGTTCT ATCCTCTTAT GGGAACAGGA
  ATGGTGGACA GACGCGGGAA GAAGAGAACT GCGCAAGGGA GGAGAAAGGG TGCTGGCCAC
  GAGGGTTGCC TTCAGTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51451023	NES14001702	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38447916					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51451023	NES14001702	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135708733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	623 bp proximal
Gm14329	predicted gene 14329	1135 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63773	transcription start site region 63773	1855 bp upstream
Tssr63774	transcription start site region 63774	468 bp upstream
Tssr63775	transcription start site region 63775	1027 bp downstream
Tssr63776	transcription start site region 63776	1852 bp downstream
Tssr63777	transcription start site region 63777	1872 bp downstream
Tssr63778	transcription start site region 63778	1930 bp downstream