rs38448806 SNP Detail

Summary

• ID
  rs38448806
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130415408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAAAAA CCAAAAAAAC
  AAAAAACAAA AAACAAACCT CAGTAGCAGA GGCCTTCATC ATGCAAGATG GAGAAGCGGA
  ATGTGGGAAG CAAGGTATGG CGGCTTTGCC CAAGGCTGTG CTTTCGGTTC CTCTGTGAAC
  AGCTTTCCTG GGGATTGCAA ACTGGACTGT GGCCACTGTC ATCAGGATGC GTCCTCAGCA
  W
  GCACAGCTGG AGGGTTCAGA GGTGAACGTG TCCCCCGAGG GGGCTCCACA CAGTACCTCT
  TTCTCCTGTC CTTCCCAAAG CTGGAGGTCC CGGCTGCTCT GTGTGCTGTT GTTCAAGTGT
  CAGCAGCCCC CCTCCCAGGG GCTTTCTGAG GTTTTGACAA GAGAGGCCTG GGATGGATGG
  GTATCACAAA TTGTGTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51851740	NES14692041	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38448806					SNP	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51851740	NES14692041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130415408 () rs orientation: forward

Symbol	Name	Function Class
A330070K13Rik	RIKEN cDNA A330070K13 gene	1936 bp upstream
Caln1	calneuron 1	within coordinates
Rr621523	regulatory region 621523	1931 bp distal
Rr621524	regulatory region 621524	1681 bp distal
Tssr49063	transcription start site region 49063	1979 bp downstream
Tssr49064	transcription start site region 49064	1850 bp downstream
Tssr49065	transcription start site region 49065	1807 bp downstream