rs38449275 SNP Detail

Summary

• ID
  rs38449275
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGACACAG TAGACATCCC TCCCTGGGTT GACACCACAG
  CAGATAAATG TTATCCCCGG AGTCCCCTAA GTTAAGGTCA GGGCAGCTGC TGGAGAAATA
  K
  ATCTGTCAGC TCACTCCCTA GACTGTAACA ACTACCAAAA TGCCTCCAAA GATAGACAAC
  ACGTGTCTGG CTTTTTTTTT TTTTTAAGCT TTTGATCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51810824	NES14774568	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	G	T	T	T	T	T
ss133506697	ENSMUSSNP33592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38449275					SNP	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810824	NES14774568	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639216 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1321 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	522 bp distal
Rr399817	regulatory region 399817	373 bp downstream
Rr636156	regulatory region 636156	1371 bp distal
Rr636157	regulatory region 636157	1510 bp distal
Rr636158	regulatory region 636158	831 bp distal
Rr636159	regulatory region 636159	268 bp distal
Rr636160	regulatory region 636160	1325 bp proximal
Tssr58072	transcription start site region 58072	1809 bp downstream
Tssr58073	transcription start site region 58073	1758 bp downstream
Tssr58074	transcription start site region 58074	1721 bp downstream
Tssr58075	transcription start site region 58075	1573 bp downstream
Tssr58076	transcription start site region 58076	1468 bp downstream
Tssr58077	transcription start site region 58077	1389 bp downstream
Tssr58078	transcription start site region 58078	478 bp downstream
Tssr58079	transcription start site region 58079	259 bp downstream
Tssr58080	transcription start site region 58080	84 bp upstream
Tssr58081	transcription start site region 58081	515 bp upstream
Tssr58082	transcription start site region 58082	864 bp upstream