rs38452949 SNP Detail

Summary

• ID
  rs38452949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90886438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAGCTC TCTGTGCTGG
  TCACAAGGAA GCTGAAAGGG ACAGCCCAGG AGGAGCAGGC ACACTTGGCT CAGGGCATCC
  AAGTATCTGG GTATCAGGTA AGGTAGGGCT GACAGTCTTC TGGGAGCCAT TTGACACTGG
  ATCTTCCCTG AGACAGTTCT CATCAGCTTT GGCAAGCAGT GATTACAGAG AAAACCAACG
  Y
  CTGGAAGCCT CCAGGGCTCA AGCATAAGCC ATCTCCGACA CAGAACATGA ATGGACAAAG
  AGGCAGCCCC GGCAGATTTG CCACAAAGAC GTAGTAGCTT GGGCTGGGGA CCCTCTGAAG
  CACAGGCTGA GATGTGTCCT CCGCCAGCTC TCCTGCAGTG GCAGCGGCTA TCGTGCACAG
  CACTGGCGCT GCCTGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
ss51301112	NES14511553	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
rs38452949					SNP	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301112	NES14511553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90886438 () rs orientation: forward

Symbol	Name	Function Class
Rab17	RAB17, member RAS oncogene family	within coordinates
Rr415504	regulatory region 415504	1567 bp distal
Rr415505	regulatory region 415505	1813 bp distal
Rr415506	regulatory region 415506	1666 bp distal