rs38454628 SNP Detail

Summary

• ID
  rs38454628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118354119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGGCA GGTCTAATTT
  CTCTTGGTGG TTGGAATGAT TCAGAGGCTC AAGGATTAGT GAGAAGGGAA GCAGTATCTT
  GGGGAGAGAA ATGAGGAGAA TCAGGGAAGA GATGAAAGTT CAGAACAATG CTTGGTGGGT
  GTAACAGTTG TTAGGGAGGA GAGACCCCAG TGAGGTAGAA GGTGGACAGG AGCTTGTCAC
  R
  CAGATATGAA CAAGAAGGAT AACAACAACA ACAATAACAA CAACCAAACA AACCCCAATT
  GTATGTGGGC TGCATTGGGC CACTGAAAAA GGTCACATCT TGTGGGTGGG GGAGCGAGGG
  GGCTAATTCA TATTTAGAAT CCCACTCTAG AGTTCAGGAG ACTTAACAGC AGAAGCTGAC
  ATACCCGTTT CCAAGTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51603638	NES14666217	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38454628					SNP	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603638	NES14666217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118354119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13752	CpG island 13752	1562 bp proximal
Dpyd	dihydropyrimidine dehydrogenase	1659 bp upstream
Rr583905	regulatory region 583905	1193 bp proximal
Rr583906	regulatory region 583906	1721 bp proximal
Tssr31414	transcription start site region 31414	1675 bp upstream
Tssr31415	transcription start site region 31415	1692 bp upstream