rs38455073 SNP Detail

Summary

• ID
  rs38455073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86586806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTCTTGG GCAGGAACCA
  GATTTTCCTC TTTCTAGACA CTTCCACACC TCTGCCCTGA CCAGACCTGG ACAATGCAGG
  GTTGATGGGT CAGCCAACTG ATGGGGCTGC CAGAGAGCCA CTCTGAAATG TTTCCTAGCC
  TAGGGTGGAC TCAAGTTCTT TTGAGAAACA ATGTGAAAAC TTGATTCCAC CAGGTATCTG
  R
  TGTGCTTGTC AGCCAGTGGT CCCACACCCC CATAGGTGAG TGTCATCAGG GGCCACACTG
  AAGGTGGCTC AGCCAGGAGG GAAGGGCTTG GGTAACCAGA CACAAAGGGG CCTGTGTGGT
  GGCACAGACC TCTGACCCAG CCTTCAGGAA GCAGGCTGAA GGACACAAGC AAGCTTGAGG
  CCAACCTCAT CTCCATGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51751735	NES14803835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38455073					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751735	NES14803835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86586806 () rs orientation: forward

Symbol	Name	Function Class
Gm67317	predicted gene, 67317	467 bp upstream
Rr150658	regulatory region 150658	within coordinates
Tssr57493	transcription start site region 57493	1978 bp downstream
Tssr57494	transcription start site region 57494	251 bp downstream
Tssr61824	transcription start site region 61824	498 bp upstream
Tssr61825	transcription start site region 61825	462 bp upstream